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Configs/Cline rules/u9401066/pubmed-search-mcp

Cline rules

.clinerules/00-project.md
Cline rules

Quality

86/100

Scores the file, not the repository.

Length

246 words

7 headings · 0 code blocks

Repository

23

— · pushed 0 days ago

Last changed

3 days ago

First indexed 3 days ago.
u9401066/pubmed-search-mcp/.clinerules/00-project.mdRawGitHub
1# asset-aware-mcp: Project Rules
2 
3These rules are meant for Cline usage in this repository.
4 
5## Goals
6- Build an MCP server and VS Code extension for **asset-aware, citation-ready** document workflows.
7- Prefer correctness and reproducibility: deterministic outputs, clear error paths, and tests for regressions.
8 
9## Repo Layout (DDD-ish)
10- `src/domain/`: pure domain models/value objects (avoid I/O and framework coupling)
11- `src/application/`: services/use-cases (coordinate domain + infrastructure)
12- `src/infrastructure/`: adapters (DOCX/PDF/Marker/LightRAG, file I/O)
13- `src/presentation/`: MCP tool layer + server wiring
14- `vscode-extension/`: client integration (TypeScript)
15 
16## Canonical Commands
17- Python checks: `uv run ruff check .`, `uv run mypy src --ignore-missing-imports`, `uv run pytest`
18- VS Code extension checks (run in `vscode-extension/`): `npm run test:ci`
19- Docker smoke: `docker build -t asset-aware-mcp:smoke .` then `docker run --rm --entrypoint python asset-aware-mcp:smoke -c "import src.presentation.server"`
20 
21## Safety / Hygiene
22- Avoid editing or committing generated/ignored outputs: `dist/`, `vscode-extension/out/`, `data/`, `.venv/`.
23- Never print or commit secrets from `.env`, key files, or `secrets/`.
24- Avoid destructive git operations (`reset --hard`, `clean -fdx`) unless explicitly asked.
25 
26## Prefer Existing Patterns
27- Keep MCP tool outputs backward-compatible when possible (tolerate alias keys / bilingual labels when parsing).
28- Add focused tests with fixes; keep changes minimal and scoped.
29- If you need product/architecture context, start with `memory-bank/activeContext.md` and `ARCHITECTURE.md`.
30 
31## Repo Defaults
32- Default branch: `master` (release workflows assume this unless the repo is reconfigured).
33- Use `.clineignore` to keep Cline indexing fast; explicitly mention ignored fixtures when you need them.
34 

Commands it names

  • uv run ruff check .
  • uv run mypy src --ignore-missing-imports
  • uv run pytest
  • npm run test:ci
  • docker build -t asset-aware-mcp:smoke .
  • docker run --rm --entrypoint python asset-aware-mcp:smoke -c "import src.presentation.server"

Sections

  • asset-aware-mcp: Project Rules
  • Goals
  • Repo Layout (DDD-ish)
  • Canonical Commands
  • Safety / Hygiene
  • Prefer Existing Patterns
  • Repo Defaults

What it covers

testlint-formatcode-stylearchitecturedo-not

Stack — with the evidence

python

(1.00)

docker

(1.00)

pytest

(0.95)

ruff

(0.95)

fastapi

(0.70)

github-actions

(0.60)

Format

Cline rules

A single file or a folder of files, all always-on. The folder form is the simplest way any format here lets you split rules into topics without also learning an activation model.

What the corpus says about it

Repository

Owner
u9401066
Language
—
License
—
Archived
no

All configs in this repo

Also in u9401066/pubmed-search-mcp

Diff this repo’s formats

One repository carrying more than one format is the comparison this product exists for: does anyone actually write different content in each file, or is one a copy of the other?

The other instruction files in this repository
RepositoryFormatStackCoversScoreChanged
u9401066/pubmed-search-mcp.clinerules/20-zotero-vscode-extension.md · 23Cline rulespythondocker+4teststyledo-not69/1003 days ago
u9401066/pubmed-search-mcp.clinerules/30-citation-ready.md · 23Cline rulespythondocker+4styledo-not36/1003 days ago
u9401066/pubmed-search-mcp.clinerules/00-workspace-baseline.md · 23Cline rulespythondocker+4monorepo16/100yesterday
u9401066/pubmed-search-mcp.clinerules/10-python-ddd.md · 23Cline rulespythondocker+4testlint-formatdo-not39/100yesterday
u9401066/pubmed-search-mcp.clinerules/10-python.md · 23Cline rulespythondocker+4setuptestlint-formatstyle+178/1003 days ago
u9401066/pubmed-search-mcp.clinerules/10-zotero-python.md · 23Cline rulespythondocker+4setuptestlint-formatstyle+171/1003 days ago
u9401066/pubmed-search-mcp.clinerules/20-docs-and-generated-assets.md · 23Cline rulespythondocker+4styledo-notdocs35/1003 days ago
u9401066/pubmed-search-mcp.clinerules/20-vscode-extension.md · 23Cline rulespythondocker+4teststyledo-not55/1003 days ago
u9401066/pubmed-search-mcp.clinerules/40-release.md · 23Cline rulespythondocker+4testlint-formatdeploymentdo-not74/1003 days ago
u9401066/pubmed-search-mcp.clinerules/40-zotero-release.md · 23Cline rulespythondocker+4testlint-formatdeploymentdo-not67/1003 days ago
u9401066/pubmed-search-mcp.clinerules/50-pubmed-project.md · 23Cline rulespythondocker+4testlint-formatstylearch+194/1003 days ago
u9401066/pubmed-search-mcp.clinerules/60-pubmed-python.md · 23Cline rulespythondocker+4setuptestlint-formatstyle+286/1003 days ago
u9401066/pubmed-search-mcp.clinerules/70-pubmed-mcp-tools.md · 23Cline rulespythondocker+4apido-notagent-behaviourdocs59/100yesterday
u9401066/pubmed-search-mcp.clinerules/80-pubmed-release.md · 23Cline rulespythondocker+4testlint-formatdeploymentdo-not68/1003 days ago
u9401066/pubmed-search-mcpAGENTS.md · 23AGENTS.mdpythondocker+4teststyledo-notagent-behaviour86/1003 days ago
u9401066/pubmed-search-mcp.clinerules/30-mcp-surface-and-sync.md · 23Cline rulespythondocker+4do-not23/1003 days ago
u9401066/pubmed-search-mcp.clinerules/30-zotero-research-workflow.md · 23Cline rulespythondocker+4styledo-notagent-behaviour50/1003 days ago
u9401066/pubmed-search-mcp.clinerules/35-foam-llm-wiki.md · 23Cline rulespythondocker+4styledo-notagent-behaviour55/1003 days ago
u9401066/pubmed-search-mcp.clinerules/00-zotero-project.md · 23Cline rulespythondocker+4testlint-formatstylearch+274/1003 days ago
u9401066/pubmed-search-mcp.github/copilot-instructions.md · 23Copilot instructionspythondocker+4setupbuildtestlint-format+877/100yesterday
Diff against .clinerules/20-zotero-vscode-extension.md Diff against .clinerules/30-citation-ready.md Diff against .clinerules/00-workspace-baseline.md Diff against .clinerules/10-python-ddd.md Diff against .clinerules/10-python.md Diff against .clinerules/10-zotero-python.md Diff against .clinerules/20-docs-and-generated-assets.md Diff against .clinerules/20-vscode-extension.md Diff against .clinerules/40-release.md Diff against .clinerules/40-zotero-release.md Diff against .clinerules/50-pubmed-project.md Diff against .clinerules/60-pubmed-python.md Diff against .clinerules/70-pubmed-mcp-tools.md Diff against .clinerules/80-pubmed-release.md Diff against AGENTS.md Diff against .clinerules/30-mcp-surface-and-sync.md Diff against .clinerules/30-zotero-research-workflow.md Diff against .clinerules/35-foam-llm-wiki.md Diff against .clinerules/00-zotero-project.md Diff against .github/copilot-instructions.md

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