AGENTS.md

1### Gateway API (`app/gateway/`)
2 
3FastAPI application on port 8001 with health check at `GET /health`. Set `GATEWAY_ENABLE_DOCS=false` to disable `/docs`, `/redoc`, and `/openapi.json` in production (default: enabled).
4 
5CORS is same-origin by default when requests enter through nginx on port 2026. Split-origin or port-forwarded browser clients must opt in with `GATEWAY_CORS_ORIGINS` (comma-separated exact origins); Gateway `CORSMiddleware` and `CSRFMiddleware` both read that variable so browser CORS and auth-origin checks stay aligned. Those clients also need `CORS_EXPOSED_HEADERS` (`csrf_middleware.py`): run-creating routes return the run's id in `Content-Location`, which is not CORS-safelisted, so JS cannot read it unless it is exposed. The LangGraph SDK resolves run metadata from that header alone — withhold it and `useStream`'s `onCreated` never fires, a new thread keeps its placeholder route, and every action gated on an established thread (edit, regenerate, branch) stays hidden until the page is reloaded. Same-origin nginx deployments never hit this because CORS does not apply.
6 
7Browser auth sessions are owned by `app.gateway.auth.session_cookie`. Login accepts a `remember_me` form flag, but the Gateway never stores passwords. `SessionCookiePolicy` persists the `HttpOnly access_token` cookie only for HTTPS/trusted-forwarded HTTPS, direct-host localhost HTTP, or explicit operator opt-in for insecure persistence; public HTTP sandbox URLs degrade to session cookies. Session-creating handlers stamp the final `max_age` on `request.state`, and CSRF cookie creation mirrors that value so the double-submit cookie pair expires together, including explicit re-issue after password changes and OIDC callbacks. A small `HttpOnly` preference cookie preserves the user's remember choice across token re-issue paths. Logout clears all auth cookies and suppresses CSRF re-issue on the logout response.
8 
9Localhost persistence deliberately reads the direct request `Host` and ignores `Forwarded` / `X-Forwarded-Host`. Scheme and auth-origin reconstruction still consume forwarding headers. The bundled nginx sets `X-Forwarded-Proto`, but preserves an upstream HTTPS value and does not overwrite every forwarded header, so the outer trusted proxy must replace or strip client-supplied forwarding headers before traffic reaches DeerFlow.
10 
11**Routers**:
12 
13| Router | Endpoints |
14|--------|-----------|
15| **Models** (`/api/models`) | `GET /` - list models; `GET /{name}` - model details |
16| **Features** (`/api/features`) | `GET /` - report config-gated feature availability (`agents_api.enabled`, `browser_control.enabled`) for frontend UI gating |
17| **Console** (`/api/console`) | Read-only cross-thread observability for the current user (the data layer for an operations dashboard or external monitoring): `GET /stats` - headline counters (runs/threads/agents/tokens/cost); `GET /runs` - paginated run history joined with thread titles (per-run cost); `GET /usage` - zero-filled daily token series + per-model breakdown with spend. Queries `runs`/`threads_meta` directly as a reporting layer (no new `RunStore` methods); requires a SQL database backend — returns 503 on `database.backend: memory`. Real-cost estimation reads optional `models[*].pricing` (`currency`, `input_per_million`, `output_per_million`, `input_cache_hit_per_million`; `ModelConfig` is `extra="allow"`, so no schema change) and prices each run from its `token_usage_by_model` input/output split. Pricing is **cache-aware**: `RunJournal` accumulates prompt-cache hits from `usage_metadata.input_token_details.cache_read` into a sparse `cache_read_tokens` bucket key (also threaded through `SubagentTokenCollector` → `record_external_llm_usage_records`), and cache-hit input tokens are billed at `input_cache_hit_per_million` (omitted → billed at the miss price, a conservative upper bound). All priced models must use one currency; mixed currencies disable cost reporting and leave cost/currency fields null instead of producing invalid aggregates. Legacy rows fall back to run-level totals at `model_name`; unpriced models yield `cost: null` and cost fields are null when no pricing is configured |
18| **MCP** (`/api/mcp`) | `GET /config` - get config; `PUT /config` - replace the full config with whole-payload stdio validation; `PATCH /config` - toggle one server while preserving the raw extensions config and validating only an enabled target; both writes reload config and reset the process-local MCP cache |
19| **MCP Tasks** (`/api/threads/{id}/mcp-tasks`) | `GET /` - current user's durable tasks for one owned thread; `GET /{task_id}` - bounded result/input/error detail without remote task IDs or driver configuration |
20| **Skills** (`/api/skills`) | `GET /` - list skills; `GET /{name}` - details; `PUT /{name}` - update enabled; `POST /install` - install from .skill archive (accepts standard optional frontmatter like `version`, `author`, `compatibility`); `POST /reload` - admin-only process-local prompt-cache invalidation after trusted external filesystem changes |
21| **Integrations** (`/api/integrations`) | `GET /lark/status` - inspect managed Lark/Feishu CLI integration state, including `sandbox_runtime_mode` / `sandbox_runtime_ready` (whether `lark-cli` will actually be present in the sandbox at chat time); `POST /lark/install` - admin-only install of the official `lark-*` managed skill pack; `POST /lark/config/start` and `/lark/config/complete` - internal first-time Lark connection setup; `POST /lark/config/credentials` - atomically switch the caller's per-user Lark app after validating the new `app_id`/`app_secret` through the official CLI's live tenant-token probe, revoke/remove the previous OAuth tokens, and restore the prior credential tree if the switch fails; `POST /lark/auth/start` and `/lark/auth/complete` - browser device-flow user authorization without terminal access, with optional `domains` / exact `scope` for incremental permission grants. Config and auth flows carry a server-issued, per-user generation persisted under the credential lock; a rejected direct switch leaves the current generation unchanged, stale completions return 409, and browser re-registration uses the same token-clearing/revocation transaction as direct credential switches. |
22| **Memory** (`/api/memory`) | `GET /` - memory data; `POST /reload` - force reload; `GET /config` - config; `GET /status` - config + data |
23| **Uploads** (`/api/threads/{id}/uploads`) | `POST /` - upload files (auto-converts PDF/PPT/Excel/Word); `GET /list` - list; `DELETE /{filename}` - delete |
24| **Threads** (`/api/threads/{id}`) | `DELETE /` - remove DeerFlow-managed local thread data after LangGraph thread deletion; `POST /branches` - create a new main-thread branch from a completed assistant turn checkpoint and, when an addressable pre-user replay checkpoint exists, materialize it into the branch namespace so the inherited response remains regeneratable. Workspace files are not checkpointed, so the branch only best-effort copies the current workspace when branching from the **latest** turn (`workspace_clone_mode="current_thread_best_effort"`); branching from an older/historical turn skips the copy (`workspace_clone_mode="skipped_historical_turn"`) so the branch never inherits files that only exist in a later timeline. Thread-scoped runtime channels (`sandbox`, `thread_data`) are not copied onto the branch: the parent's `sandbox_id` binds path mappings and the release lifecycle to the parent's workspace, so the branch lazily acquires its own sandbox instead. Branch creation also seeds the new thread's run-event feed from the branch checkpoint's visible messages (`history_seed_mode` in the response): the thread feed reads run_events, not checkpoints, so without the seed the inherited history disappears from the UI after the branch's first run (#4380). Seeded rows are grouped into one synthetic run per inherited turn (`branch-seed-{thread_id}-{n}`, a new turn opening at every persisted human message, including an allowlisted hidden `ask_clarification` reply) because `run_id` is a turn identity to the feed's consumers, not a provenance tag: regenerating an inherited answer supersedes that row's whole `run_id` in `GET /messages/page`, so one shared id for the entire seed deleted the complete inherited history on a branch's first regenerate (#4458); `GET /goal`, `PUT /goal`, `DELETE /goal` - read, set, and clear the active thread goal; `POST /compact` - manually summarize older active context into `summary_text` and retain the recent message window, blocked while a run is in flight; unexpected failures are logged server-side and return a generic 500 detail |
25| **Artifacts** (`/api/threads/{id}/artifacts`) | `GET /{path}` - stream regular text and binary artifacts with `FileResponse`, including byte-`Range` 206/416 behavior used by bounded text previews and media seeking; active content types (`text/html`, `application/xhtml+xml`, `image/svg+xml`) are always forced as download attachments to reduce XSS risk; `?download=true` still forces download for other file types. `PUT /{path}` atomically replaces an existing UTF-8 text file under `/mnt/user-data/outputs` when its expected SHA-256 still matches; active runs conflict, and non-mounted sandbox providers receive the same update explicitly. Atomic replacement applies the existing POSIX permission handling when descriptor-based APIs are available and otherwise keeps the platform-native temporary-file permissions (Windows). |
26| **Suggestions** (`/api/suggestions`) | `GET /config` - returns global suggestions config boolean; `POST /threads/{id}/suggestions` - generate follow-up questions; rich list/block model content is normalized and inline reasoning (`<think>...</think>`, including unclosed/truncated blocks from reasoning models like MiniMax-M3) is stripped before JSON parsing |
27| **Input Polish** (`/api/input-polish`) | `POST /` - rewrite a composer draft before it is sent. This is a short authenticated `runs:create` LLM request using `input_polish` config; it does not create a LangGraph run, persist a message, or modify thread state. Shares the non-graph one-shot LLM path (`deerflow.utils.oneshot_llm.run_oneshot_llm`) with the suggestions route so model build + Langfuse metadata + invoke stay in one place; validates the same stripped view of the draft it sends to the model, and preserves literal `<think>` substrings in the rewrite (`strip_think_blocks(truncate_unclosed=False)`) |
28| **Thread Runs** (`/api/threads/{id}/runs`) | `POST /` - create background run; `POST /stream` - create + SSE stream; `POST /wait` - create + block. Before the first journaled run, an empty run-event message feed is seeded from an existing checkpoint head so legacy checkpoint-only history receives earlier thread-global sequence numbers and remains visible after the new run; a thread with no checkpoint or an already-populated feed skips this compatibility path. `POST /regenerate/prepare` - prepare clean input + checkpoint metadata for regenerating the latest completed or interrupted assistant answer, carrying the latest non-empty thread title in graph input so resuming an older checkpoint cannot roll back a later manual rename (#4457); `POST /edit-regenerate/prepare` - prepare a checkpoint replay from the latest editable human turn with a replacement user message and edit replay metadata; it carries the current thread title the same way, but only when the replay base already has one — an untitled base belongs to a thread the title middleware has not named yet, so pinning the current title there would keep a name generated from the prompt the edit just replaced; `GET /` - list runs; `GET /{rid}` - run details; `POST /{rid}/cancel` - cancel; `GET /{rid}/join` - join SSE; `GET /{rid}/messages` - paginated per-run messages `{data, has_more}`; `GET /{rid}/events` - full event stream; `GET /{rid}/workspace-changes` - workspace/output file change summary and optional diffs; `GET /../messages` - legacy thread message array; `GET /../messages/page` - backward thread-global `seq` history page with middleware/subagent-AI/successful-regenerate/edit-replay filtering and page-run-scoped feedback enrichment; subagent AI callbacks remain available through run events while parent `task` ToolMessages stay visible for card restoration; `GET /../token-usage`  - aggregate tokens plus an optional `context_usage` percentage. Context usage approximately counts messages from the latest materialized thread state through `build_thread_checkpoint_state_accessor`, so full and delta checkpoint modes expose the same input. The percentage uses the latest run's model and its configured `context_window`.  |
29| **Feedback** (`/api/threads/{id}/runs/{rid}/feedback`) | `PUT /` - upsert feedback; `DELETE /` - delete user feedback; `POST /` - create feedback; `GET /` - list feedback; `GET /stats` - aggregate stats; `DELETE /{fid}` - delete specific |
30| **Runs** (`/api/runs`) | `POST /stream` - stateless run + SSE; `POST /wait` - stateless run + block; `GET /{rid}/messages` - paginated messages by run_id `{data, has_more}` (cursor: `after_seq`/`before_seq`); `GET /{rid}/feedback` - list feedback by run_id |
31| **GitHub Webhooks** (`/api/webhooks/github`) | `POST /` - receive GitHub App / repo webhook deliveries. Verifies `X-Hub-Signature-256` against `GITHUB_WEBHOOK_SECRET`; exempt from auth + CSRF because authenticity is enforced by HMAC. The route is fail-closed: mounted only when `GITHUB_WEBHOOK_SECRET` is set, or when explicit dev opt-in `DEER_FLOW_ALLOW_UNVERIFIED_GITHUB_WEBHOOKS=1` is set. Recognized events include `ping`, `issues`, `issue_comment`, `pull_request`, `pull_request_review`, and `pull_request_review_comment`; unknown events return 200 with `handled=false`. Fan-out runtime failures return 503, keeping the delivery recorded as failed for manual/API/scripted redelivery (GitHub does not automatically retry any failed delivery, 5xx included); permanent/non-retryable conditions such as `channels.github.enabled: false`, unknown events, malformed payloads, or unavailable channel service return 200 with a skipped/handled response. |
32| **GitHub Event-Driven Agents** | Custom agents can declare a `github:` block in their `config.yaml` to bind to repos and event triggers. Webhook fan-out publishes one `InboundMessage` per matching binding to the channel bus; `GitHubChannel` routes those messages through `ChannelManager`. The response `dispatch` summarizes matched/fired/skipped agents. |
33 
34Thread identifiers use the shared `deerflow.utils.thread_id` contract
35`^[A-Za-z0-9_-]{1,64}$`. Caller-provided opaque IDs remain supported; UUIDs
36are generated only for `None`, while explicit empty strings fail validation.
37Gateway creation and state-producing request boundaries, embedded-client
38entry points, filesystem/upload/event-store consumers, scheduled launches,
39and the standalone Provisioner enforce the same contract before persistence
40or workspace initialization. Route-addressable legacy IDs remain accepted by
41pure reads and cleanup/control endpoints. Deleting a noncanonical legacy ID
42best-effort removes its metadata and checkpoints but deliberately skips local
43filesystem cleanup, so the raw value is never interpolated into a host path;
44new runs, workspace/sandbox operations, and other state-producing mutations
45remain blocked.
46 
47**Workspace change review**: `packages/harness/deerflow/workspace_changes/`
48captures a pre-run and post-run snapshot of the thread-owned `workspace` and
49`outputs` directories. `runtime/runs/worker.py` performs the filesystem scan via
50`asyncio.to_thread` and writes a `workspace_changes` event with category
51`workspace` when changes exist. Uploads are intentionally excluded. Text diffs
52are size-limited; binary, large, and sensitive-looking paths are persisted as
53metadata only. Internal process-feedback directories never count as changes:
54the scanner's `EXCLUDED_DIR_NAMES` drops `BROWSER_FRAMES_DIRNAME` (transient
55browser screenshots) and `TOOL_RESULTS_DIRNAME` (the tool-output budget
56middleware's default externalization subdir, `constants.py` is the shared
57source of truth for both writers and the scanner), and the worker threads the
58configured `tool_output.storage_subdir` through the snapshot capture as an
59extra excluded dir name so custom storage locations stay excluded too.
60 
61**Run delivery receipts**: `RunJournal` records each non-empty artifact update
62once per tool `Command` for the terminal `run.delivery` event. When a command
63contains multiple messages, a unique tool name resolved from matching
64`ToolMessage` entries supplies attribution; additional command messages do not
65duplicate artifact paths or counts. If multiple different tool names resolve
66for one flat artifact update, the paths remain counted but unattributed because
67the command does not carry a per-path mapping. `RunJournal` callbacks set
68`run_inline=True`: they do only in-memory bookkeeping or schedule async writes,
69and staying on the run's event-loop thread serializes parallel tool callbacks
70before terminal delivery recording and flushing. Each worker creates a separate
71journal per run before cancellable/fallible preflight work, so checkpoint
72compatibility failures and cancellation while waiting for prior finalization
73still emit a zero-delivery receipt. The worker flushes ordinary journal events,
74idempotently persists the run-scoped receipt, and only then persists the staged
75terminal run status. A receipt failure is retried on a short bounded schedule
76while the owning worker still knows the real outcome and holds the lease. The
77worker derives delivery requirements from the run's workspace snapshots rather
78than a client request option: every regular file created or modified under
79`/mnt/user-data/outputs` is a candidate produced artifact. Internal
80process-feedback files are not candidates: the snapshot capture excludes the
81scanner's `EXCLUDED_DIR_NAMES` (including the default tool-output
82externalization subdir) plus the configured `tool_output.storage_subdir`, so a
83run that only externalized oversized tool outputs does not fail delivery. At
84least one candidate must be covered by a path attributed by the journal to
85`present_files`; presenting only an unrelated pre-existing path does not
86satisfy delivery.
87Receipts for such runs add `produced_paths`, `presented_paths`, `matched_paths`,
88`verification`, `stage`, and `satisfied` to the Slice 1 fact fields. Missing a
89matching presentation becomes a run error; a successful presentation is also
90downgraded to error if its receipt cannot be durably verified. Runs without
91changed outputs preserve ordinary chat behavior and the original receipt shape.
92Orphan recovery first
93atomically claims an expired lease, then uses the same singleton write to
94backfill a zero-delivery receipt. This ordering prevents a stale recovery scan
95from overwriting a live run's later detailed receipt; an event-store outage
96does not undo the terminal takeover. An existing detailed receipt is preserved
97when a worker crashed after writing it. Event stores
98serialize `put_if_absent` with ordinary thread writers: memory and JSONL provide
99the documented single-process guarantee, while the DB store adds per-thread
100in-process locks and PostgreSQL advisory locks for cross-process writers.
101Moving journal construction ahead of preflight is receipt-only on early failure
102paths: a separate boundary flag preserves the previous completion-data
103semantics, so checkpoint incompatibility or cancellation while waiting for an
104older finalizing run does not persist an empty completion snapshot. Worker tests
105pin one accumulated receipt across multiple goal-continuation `_stream_once`
106calls; journal tests drive LangChain's real async callback dispatcher against a
107single journal to pin serialized, deduplicated parallel tool callbacks.
108Multi-worker deployments therefore require `run_events.backend: db` for shared,
109ordered delivery events; the startup gate rejects process-local memory and
110JSONL event stores when `GATEWAY_WORKERS > 1`.
111 
112**RunManager / RunStore contract**:
113- LangGraph-compatible run requests validate their supported subset before creating a run. `runtime/stream_modes.py` is the shared backend contract for public stream modes and the worker's `graph.astream` mapping; the public `messages-tuple` mode maps to LangGraph's internal `messages` mode, while public `messages`, `events`, and other unsupported modes are rejected instead of being dropped or replaced with `values`. `app/gateway/run_models.py::RunCreateRequest` is shared by HTTP and internal scheduled launch paths, retains only truthful compatibility defaults for unimplemented options (`if_not_exists="create"` plus `None` placeholders), returns 422 for unsupported values including `on_completion="complete"`, `on_completion="continue"`, and `multitask_strategy="enqueue"`, and forbids undeclared SDK options so fields such as `checkpoint_during` and `durability` cannot be silently discarded. A placeholder must still accept the stock SDK's own default: `langgraph_sdk` drops only `None` from its run payload, so `stream_resumable=False` reaches every request and means "non-resumable", which is what DeerFlow serves — rejecting it 422'd every IM channel run (#4466). `tests/test_run_request_validation.py::test_gateway_accepts_langgraph_sdk_default_payload` pins the real SDK payload against this boundary; channel tests mock the SDK client and cannot catch this class of drift.
114- `RunManager.get()` is async; direct callers must `await` it.
115- The history batch helpers `list_successful_regenerate_sources()`, `list_edit_regenerate_runs()`, and `get_many_by_thread()` default to `user_id=AUTO`: they resolve the request user and fail closed when no user context exists. Migration/admin callers that intentionally need an unscoped read must pass `user_id=None` explicitly.
116- Edit-and-rerun visibility is derived from edit replay runs (`metadata.replay_kind="edit"` plus `regenerate_from_run_id`) by `RunManager.list_edit_replay_visibility()`: the newest attempt for each source run is authoritative. Pending/running/success attempts hide the original source run; failed, timed-out, or interrupted attempts hide only the failed attempt so the original conversation reappears.
117- When a persistent `RunStore` is configured, `get()` and `list_by_thread()` hydrate historical runs from the store. In-memory records win for the same `run_id` so task, abort, and stream-control state stays attached to active local runs.
118- Thread metadata status switches to `running` only after `RunManager.try_start()` succeeds. Pending-cancelled runs therefore skip the old `running` projection, while clients may observe the prior thread status during the short worker-startup window.
119- `cancel()` returns a :class:`~deerflow.runtime.CancelOutcome` enum: `cancelled` (local cancel), `requested` (the non-owning worker durably recorded the first cancellation action for the live owner), `taken_over` (non-owning worker claimed the run because the owner's lease expired — marks it as `error`), `lease_valid_elsewhere` (legacy/custom store lacks the durable request primitive — caller retains the safe 409 + `Retry-After` fallback), `not_active_locally` (heartbeat disabled, preserving the old 409 path), `not_cancellable` (terminal state), or `unknown` (not found in memory or store). `create_or_reject(..., multitask_strategy="interrupt"|"rollback")` persists interrupted status through `RunStore.update_status()`, matching normal `set_status()` transitions.
120- Interrupt/rollback admission registers the replacement before its best-effort persistence of locally interrupted predecessors. If the admitting caller is cancelled during that post-registration await, `RunManager` drains a shielded replacement cleanup before propagating `CancelledError`, including across repeated cancellation. The cleanup normally persists `interrupted`; if that best-effort transition fails, it retries the active-to-`interrupted` store transition strictly and verifies the result with the replacement's captured owner identity. A concurrent peer terminal transition wins and is synchronized back into the local record rather than being overwritten or deleted.
121- Store-only hydrated runs are readable history. In multi-worker mode with heartbeat enabled, cancel on a store-only run records `runs.cancel_action` / `cancel_requested_at` while the owner's lease is live; the first action wins even if a retry later lands on the owner. `RunStore.request_cancel()` and owner completion through `finalize_if_not_cancelled()` are competing active-row CAS operations, so an accepted cancel cannot be overwritten by a later success. `RunStore.renew_lease()` renews and observes the request atomically in the SQL implementation. The owner then executes the normal process-local interrupt/rollback and terminal stream path without transferring the lease. An expired owner is still taken over and marked `error`. `wait=true` and cancel-then-stream use the shared bridge to observe owner finalization; a non-standard process-local bridge returns accepted 202 instead of subscribing to an unreachable stream. In single-worker mode (heartbeat off), store-only runs still return 409.
122- A local worker's `RunRecord.lease_expires_at` is the last durably confirmed ownership deadline. `_renew_leases()` bounds each renewal attempt by that deadline: transient store exceptions remain retryable while it is valid, but an exception or blocked call that reaches expiry sets the process-local `ownership_lost` fence, raises `abort_event`, and cancels the run task. Successful renewals collect durable cancellation actions; after all local renewals have been attempted, heartbeat only signals the corresponding process-local tasks, leaving status writes and rollback cleanup to the worker finalization path. Fenced workers do not perform subsequent journal/delivery-receipt, progress/completion/status, checkpoint/thread-metadata, or `on_run_completed` writes; the peer recovery path owns the terminal receipt. `RunStore.update_run_completion()` also refuses to replace a different terminal status, closing the peer-takeover/late-finalization race. `grace_seconds` delays peer reclamation for clock skew but is not extra execution time for an owner that can no longer confirm its lease. Already-committed remote tool side effects remain outside this local cancellation boundary.
123- Startup/orphan reconciliation must claim stale active rows with `RunStore.claim_for_takeover()`, not a plain `update_status()`. The final claim re-checks `status` and lease expiry atomically, so a heartbeat renewal between the candidate scan and the recovery write keeps the run active.
124- Run admission and independent writes are first-class thread operations. `runs.operation_kind` distinguishes user-visible `run` rows from internal `checkpoint_write` and `artifact_write` reservations, while every active kind shares the existing durable active-thread uniqueness constraint. New operation kinds must go through `RunStore.create_thread_operation_atomic()` and `RunManager.reserve_thread_operation()` rather than adding another lock or metadata marker. Live and lease-less reservations are non-interruptible; an expired leased reservation can be reclaimed immediately by interrupt/rollback admission without waiting for orphan reconciliation. Lease-less rows stay fail-closed because the store cannot distinguish a stale row from a live writer in another heartbeat-disabled worker; a rare failed delete therefore requires startup reconciliation, and heartbeat-disabled multi-worker deployment remains unsupported. Reservation bodies are attached to their caller task so loss detected by lease renewal cancels the writer before it can continue after takeover; the context manager translates that lease-loss cancellation to `ConflictError` after cleanup so Gateway mutation routes return a retryable 409 instead of dropping the HTTP request. The cleanup scope begins immediately after durable admission, including the await that attaches the caller task, so cancellation cannot strand a locally renewed pending reservation. A failed renewal is revalidated under the manager lock before cancellation; if the reservation completed and unregistered while the store update was in flight, its request task must not be cancelled after the write. Reservations are excluded from run history/reporting and from run-only helpers such as `list_by_thread()` and `has_inflight()`, release uses the captured owner rather than ambient user context, and local cleanup still runs when the best-effort store delete fails. `RunStore.create_run_atomic()` remains a deprecated compatibility shim for external stores that only admit normal runs; new stores must implement `create_thread_operation_atomic()` to support internal operation kinds.
125- Gateway checkpoint mutations outside run execution must use `services.reserve_checkpoint_write()`, which composes the process-local thread lock with the durable `checkpoint_write` reservation. Manual compaction, `POST /threads/{id}/state`, and both goal mutation routes (`PUT` / `DELETE /threads/{id}/goal`, including creation of a missing goal checkpoint) use this boundary, so an existing run blocks the write and the reservation blocks new reject/interrupt/rollback runs across workers.
126- `POST /wait` (both thread-scoped and `/api/runs/wait`) drains the stream bridge via `wait_for_run_completion()` instead of bare `await record.task`, so it honours the run's `on_disconnect` setting and cancels the background run on real client disconnect rather than returning a stale checkpoint (issue #3265).
127- Memory and Redis `StreamBridge` implementations retain only `stream_bridge.queue_maxsize` data events. A syntactically valid `Last-Event-ID` older than the retained watermark, or a live subscriber that falls behind it, yields `StreamGap` before any partial replay. `sse_consumer` maps that control item to an id-less SSE `gap` payload (`stream_replay_gap`) and intentionally leaves the run active; internal `/wait` consumers resume from its latest retained ID because they only need terminal completion. Redis checks bounds plus the non-blocking read in one transaction, using blocking `XREAD` only as a wake-up before repeating the atomic snapshot. For a no-cursor subscriber that established a wait on an empty stream, the first wake response remains provisional until that next snapshot verifies its tail is still retained; this closes the pre-first-delivery trimming window without changing malformed-cursor live tailing. The correctness tradeoff is one three-command snapshot pipeline per poll plus the blocking wake round trip while idle. Malformed cursor behavior remains backend-specific. Memory treats a syntactically numeric cursor below its watermark conservatively as a gap even when the evicted timestamp can no longer be verified; unknown ids at or above the watermark retain the legacy replay-from-earliest policy.
128- Redis `StreamBridge` keys use a rolling retained-buffer TTL (`stream_bridge.stream_ttl_seconds`, refreshed on `publish()` / `publish_end()`) as a leak safety net, not as a run timeout. Startup and lease-driven periodic orphan recovery share one Gateway stream-terminalization path: after `RunManager` durably marks a run `error` with `stop_reason=orphan_recovered`, Gateway publishes `END_SENTINEL` and schedules stream cleanup. The periodic store scan, per-row status writes, and Gateway callback run as one supervised single-flight task, so a slow pass is skipped at the next interval instead of piling up or pausing the sole lease-renewal loop. Store retries have bounded attempts/backoff; an individual operation still relies on the database driver/pool timeout. `RunManager.shutdown()` gives active user runs priority within its shared deadline, then drains or cancels orphan recovery. Gateway tracks delayed recovered-stream cleanups and converts unfinished delays to immediate deletes before closing the bridge; the Redis TTL remains the outage safety net. Only startup recovery, before the runtime yields to requests, projects the latest affected thread to `error`; periodic recovery deliberately avoids that non-atomic projection because `ThreadMetaStore` has no `latest_run_id` conditional-update contract. Store-only SSE and `/wait` consumers wait for the bridge's real END marker after an ordinary durable terminal status, because status persistence can precede tail events. The explicit `orphan_recovered` signal is the only heartbeat fallback: its publisher is known to be gone, so it supplies the liveness boundary if END publication fails or the retained key expires. Malformed `Last-Event-ID` reconnect values live-tail new Redis events rather than replaying the retained buffer. Keep cross-component recovery orchestration in Gateway through the generic `RunManager.on_orphans_recovered` callback; do not introduce a harness-to-app dependency. Callback failure warnings include every recovered `run_id` so operators can identify rows whose Gateway-side terminalization needs inspection.
129- Thread-scoped run creation accepts `checkpoint` / `checkpoint_id`; Gateway validates the checkpoint belongs to the request thread before writing `checkpoint_id` / `checkpoint_ns` into `config.configurable` for LangGraph branching. In `delta` checkpoint mode the worker rewrites that fork into a linear head write before the graph starts (see "A delta-mode run cannot fork" under Checkpoint Channel Modes), because delta state for a fork replays the abandoned sibling's writes.
130- Thread-scoped Gateway runs evaluate an active `ThreadState.goal` after the visible turn completes. `runtime/goal.py` asks a non-thinking evaluator model to judge only visible conversation evidence and return a typed blocker; the evaluator model is created once per run and reused across hidden continuation checks. The evaluator runs after the graph root's tracing scope has already closed, so `create_goal_evaluator_model`/`evaluate_goal_completion` attach their own model-level tracing callbacks (`attach_tracing=True`) and inject Langfuse trace metadata (`thread_id`/`user_id`/`deerflow_trace_id`) directly onto the `ainvoke` call — the same standalone-caller pattern as `oneshot_llm.run_oneshot_llm` and `MemoryUpdater` (see Tracing System below). Satisfied goals are cleared; every non-satisfied evaluation — continuable or stand-down — is persisted with `last_evaluation` (the blocker, reason, and evidence summary; outcomes that stop the loop additionally record a `stand_down_reason` for observability), but only `goal_not_met_yet` evaluations are streamed as hidden `HumanMessage` continuations, and only when a durable assistant end-of-turn checkpoint exists, the run has not been aborted, the thread did not change during evaluation, and the no-progress breaker has not fired. The continuation cap is 8 — a hard maximum in the `0`–`8` range; callers requesting more are clamped (`set_goal`/TUI) or rejected with 422 (`PUT /goal`). The no-progress breaker keys on the latest visible assistant evidence (not the evaluator's free-text reason, which an LLM rewords every turn), so two consecutive continuations that add no new visible assistant output stop the loop after 2 attempts. Model-response cleanup helpers such as think-block stripping and code-fence stripping live in `deerflow.utils.llm_text` so `runtime/goal.py` and Gateway suggestion parsing share the same JSON-prep behavior.
131- Run event stream changes must keep producer code, `deerflow/constants.py`, `runtime/events/catalog.py`, `contracts/run_event_stream_contract.json`, `backend/docs/RUN_EVENT_STREAM.md`, and `tests/test_run_event_stream_contract.py` in sync. The dependency-free constants module owns the persisted envelope limits (`event_type` 32 characters, `category` 16) and cross-layer workspace event identity; the catalog owns validated runtime definitions and categories. Dynamic middleware tags are limited to 21 characters after the `middleware:` prefix. The JSON contract owns payload schemas, backend-specific storage semantics, legacy aliases, and compatibility rules; conformance tests require both views and all producer groups to agree. `run.end.content` remains opaque and may retain nested Python values in memory while JSONL/database stores stringify non-JSON nested values, so consumers must not assume backend-identical nested output representations.
132 
133Proxied through nginx: `/api/langgraph/*` → Gateway LangGraph-compatible runtime, all other `/api/*` → Gateway REST APIs.
134 
135**Branch/regenerate checkpoint invariant**: `app/gateway/checkpoint_lineage.py`
136walks `parent_config` rather than globally ordered checkpoint history so replay
137anchors stay on the selected lineage after regenerations create sibling branches.
138New conversation branches persist the pre-user replay anchor before their visible
139head through the state mutation graph, which preserves materialized state in both
140full and delta checkpoint modes. Only an explicitly absent legacy parent link may
141use chronological compatibility lookup; cycles, dangling links, and depth-limit
142exhaustion fail closed. Existing single-checkpoint branches are never repaired by
143copying a raw checkpoint because delta state is not self-contained in one tuple.
144Both lookups additionally require the replay base to be a **settled** checkpoint
145(`has_pending_tasks` — no scheduled `next` tasks). A checkpoint with pending tasks
146is a mid-run snapshot: resuming from it replays the writes of the node that was
147about to run. Message ids alone cannot exclude those, because middleware may
148rewrite a message's id inside the run that produced it — `DynamicContextMiddleware`
149moves the first user turn to `{id}__user` and gives `{id}` to the injected
150reminder, so every checkpoint written before it holds the same prompt under an
151unmatched id. Selecting one of those re-added the original prompt *after* the
152edited one, and the model answered the question the edit was replacing (#4531).
153`next` is not derivable on the degraded raw-checkpoint read path, which reports no
154tasks; absence of evidence stays permissive there rather than failing closed.
155Edit replay resolves its base through the same lineage-first path as regenerate;
156it must pass `head_checkpoint` or it silently degrades to the chronological scan
157that cannot tell sibling branches apart.
158